rs48355041 SNP Detail

Summary

• ID
  rs48355041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:16592103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTTCCCC CAAGTCCCCT
  CTCATATTTA TGTCCTGAAC ACTACTCACC CCCATGCAGA GACTGCATCT ATCAGGACTA
  GCTACACCTT GATCCAGCTG CACTCCATAA ACCATGCCTC CTTACTTCTC TGTATGCCCT
  AATCTCACCC TTCAGGTCAA CTCTGATATA GTAGCCATGC TTAGCTTCCA GGAAGCTGCT
  R
  TCTTCCCACT GGAAAGCAGA ATCTATATGA CCACAGCTTT TTGTCCACGC CTCTGTGTAT
  GTCTGTCTGT CTTGTCTTCA TTCCCTGCCA CTCCAGTTAG GTCTAGAGCA CTTGCTGCTC
  AAGTGTAATG GCTTGAGTTC AGATCTCCAG CAGATACGTT TTTTAAAAAC CAGGGATGCC
  CACATATCCC ATACAGCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60700036	NES16342184	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48355041					SNP	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60700036	NES16342184	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:16592103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi55	CpG island 55	1687 bp distal
Rr28890	regulatory region 28890	1302 bp distal
Stau2	staufen double-stranded RNA binding protein 2	1767 bp upstream
Tssr11040	transcription start site region 11040	1840 bp upstream
Tssr11041	transcription start site region 11041	1784 bp upstream
Tssr11042	transcription start site region 11042	1746 bp upstream