rs48356304 SNP Detail

Summary

• ID
  rs48356304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:29224263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACTAAA ATACTAGAGT
  CTCATTGTGA GACTGGACAC ATGGTTGGAG TTTCCAGAAA GAGATTTTAA TGGTGCAATC
  ATCCTTTGAC TTAAAATGGA GAGAATCTCA CTTCCTTGGC AAAGGTAGTT TGGTCTTGGT
  TTGGTTTGGT TTGCCTCATA ATAGATGTTC AAAAGAGGAC AGGCATGGAA TTTGAAGAGA
  Y
  GGGGACCTTA ATACTGGATG GATCAGCTAA GTGTGCCTAA AGACGCCAAC ACAGCTAAAG
  ACAGAACAGA ATTAGTGGCC TGGGTGGTAA AGTATCAAAG GAGTCACCAG TAGCACCAAT
  CACTACCACA TAGAATAGTA TTTGCACATT CGACACCTAA ACTAAGGGGT TCTTTGCCCA
  AAGACTGAAT TTGTTAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62195755	NES17191610	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48356304					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62195755	NES17191610	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:29224263 () rs orientation: forward

Symbol	Name	Function Class
Cacna2d3	calcium channel, voltage-dependent, alpha2/delta subunit 3	within coordinates
Tssr127822	transcription start site region 127822	1265 bp upstream