rs48357323 SNP Detail

Summary

• ID
  rs48357323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153779833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTACCT GTGAGCTGAC
  CCACACGAGA GCAGTTAGAG CCATAGCTAC CTCCCAGAGT CTCCGCTGTG AAGCGGGTAT
  TACCCCCATT CGTCCTATAG AGACAGAATA GACTTGGAGA GAACAGGGTC ACAGAGCAAA
  ACTCAGTCCT GTGAGGTGGA GCAGGTCCAA TCTACCCACC AGGGCACCTA GAATGGGAAA
  Y
  ATCTGCCTTG AGGCGGGATT AGAAGCCAGA TGTGCTCACC TGAAGGCCTG GGATCTCCAG
  GAACATAGCC AGGTCAGGGC GATAAAGCCC AGCTCATGTG ACACCATCCG GAGCTGAACA
  CACTTCTTGG AATTAGCCAC AAACCACAAA CTCTTGTGGT TTTGGGGCTC AGTGCTCAAG
  TTGTAGAGAA AATCTGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148010291	ENSMUSSNP4974935	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320566505	CHEV_2_153763649	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48357323					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153779833 () rs orientation: forward

Symbol	Name	Function Class
Bpifb4	BPI fold containing family B, member 4	304 bp upstream
Tssr20927	transcription start site region 20927	305 bp upstream