rs48357501 SNP Detail

Summary

• ID
  rs48357501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152104087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAAAACA TGCCTATGGA
  TGTTAGTTCT TTTAAAATTT TGACCCTGAG TTTTAAAAAG ATGCTTATTT TATGTGTATG
  TGCCCTAGTG TTGTGGTCAA GGAGGCCTTG AGGGTCAGAA AAGGATTGTC AACAGTCCCT
  GGAGTTACAG GCGGTGGTTG TGCGCTGCTA TGTGGGTGCT TGGAACCAGA GGATCAGCAG
  Y
  AAGTGCTCTT AGCTGCTGAG GTGTCTCTTC TAGCCCCTCA GAGTAGTAGT TTAATCCAAT
  CACTAGAACG ATAGACACCA GTAGTTAATA CAAACATCTG CTTACATTAG GAGCACTAAG
  TGTCATTTTT GTCATTACTC CTCTGAAAAA ACATAGCAGT GGTAGAATTC TATTTAAAAA
  TTCAAAAAGC CAGGCAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028820	CHEV_3_152061414	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48357501					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152104087 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13950	CpG island 13950			1177 bp distal
Rr587547	regulatory region 587547			1746 bp distal
Rr587550	regulatory region 587550			1732 bp distal
Rr587551	regulatory region 587551			516 bp distal
Rr587552	regulatory region 587552			732 bp distal
Rr587553	regulatory region 587553			1898 bp proximal
Tssr32414	transcription start site region 32414			1748 bp downstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				Noncoding-Transcript-Variant