rs48357565 SNP Detail

Summary

• ID
  rs48357565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48956217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAGGAA AATGCATGCC
  TGGGTCGTGT AATTCAGAGG GGCTCATGTG TTCCCCCAAG TGAGCCTCAG CCCCTTCTAT
  AGAGTCCGAG GGGCGGTACA TACATTGCAA ATCAATGTAT CAAAGCTGCC AGCAACCTGC
  TGTGAACTTG CTCTTCTAGG GATATGACCT TAGTGGACCC AAGGACTGCA TCAGTAAGGG
  Y
  CTTTGCTCAT AGCTGACTCC TGGTTTAAAT TCTAACCTTA CCATTTACTA AATCTGACCC
  CGTTGCCTTT TCTGTAAGAG GGTTTTGCAG TTCTCTGTCC TCCTGTAAAG GTGTTATAAC
  GTAGTCTGTA TCCAGGATCC AGCCTAGAGT CTGAGTCACT GGTGTAGATT AAGCGGGCAC
  CGTCAAGCTT CTTGTCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61005698	NES16117349	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48357565					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61005698	NES16117349	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48956217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	1676 bp distal
Nav2	neuron navigator 2	within coordinates
Rr157124	regulatory region 157124	1184 bp proximal
Rr165172	regulatory region 165172	1368 bp proximal
Rr167850	regulatory region 167850	1216 bp distal