rs48357650 SNP Detail

Summary

• ID
  rs48357650
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53766328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTAAGG ATCTCCTTCT
  TATTCCTCCA CAGTCACCTT CCAGCTCAGC CGCTGTTTAT TTAACCCAAA CACTCTGCCT
  TGTATGGAAC CTTCCAGGAT TATGCTTCTT GGGCTGCTTA CATCAGCTTT GGTCCCAAGG
  GGACCATTCT CTCTTGTGAT TAAGTCAGTG TGTGTCCTCT GTCCCTCTGA TGGTGGGATG
  G
  CGTTCATATC AGTATGTTCC ATGTTCCGTG TTACTTAATT GCACTTTTAT TAATGAAGTT
  GTACAAATTA GTAACTGAAG TCCTAAAGGT GTAGATATTG ACAGCTAAAC TTCTGCCCTG
  GTTTTTTAAA ATTCACTTCT GTCTTTTCTC TCATACAGTG TTTCTTGGGC CCCATCCTCT
  CAAGTGTCCT TAGTCTGCCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss137758482	ENSMUSSNP4574320	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs48357650					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53766328 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	273 bp proximal
Rr263732	regulatory region 263732	360 bp proximal