rs48358524 SNP Detail

Summary

• ID
  rs48358524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115472919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCACTTG GATTTCACGG
  AGAACTGGAA GTAAGTATTG GTGCCGTCCT TCTTCCTAAC TCTCAAGCAT CAGTTAACGG
  TTCAGAGTGA AGCCAGATCC CTGCTGTTCA GTGCAAGGAA CAGATGCAGG TAAGAGTGAA
  AGACAGACTA AACCTCTGTC AGGAGCAAGG TCCTGTCTGC AGTGTGATCC GTTGGTACAC
  R
  TGATGAAGTA GGAGGAACTA CTGGCCCTGC CATGGCAGGG TTGTAAGGAT CTTTAGCCAG
  CCAAGGCAGA CAGCATGGTT AGCATAGAGT TCCGTCCTCC CGCTCACAGG GTTTATTGCT
  GACTGCTGGC AGCTCTGAGA ACTCATGCAC AGGAGACAAG AAGTTCTAAA CTGTGTACAG
  TGAGCCTGGA AATGCAAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60829325	NES16021020	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48358524					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60829325	NES16021020	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115472919 () rs orientation: forward

Symbol	Name	Function Class
Gatc	glutamyl-tRNA amidotransferase subunit C	within coordinates
Rr618223	regulatory region 618223	661 bp distal
Srsf9	serine and arginine-rich splicing factor 9	1780 bp downstream
Tssr48221	transcription start site region 48221	1988 bp downstream
Tssr52783	transcription start site region 52783	796 bp upstream
Tssr52784	transcription start site region 52784	765 bp upstream
Tssr52785	transcription start site region 52785	691 bp upstream
Tssr52786	transcription start site region 52786	620 bp upstream
Tssr52787	transcription start site region 52787	580 bp upstream
Tssr52788	transcription start site region 52788	362 bp upstream
Tssr52789	transcription start site region 52789	329 bp upstream