rs48358607 SNP Detail

Summary

• ID
  rs48358607
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89926321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTATCCC TTTTACCAGA
  GTAACGTAGA TTTACTAATA TATATGCACC CCGAAGGTTA GCAATCTGAT CTTCTATGAG
  GAAAGGACAG GTATTTGAGA CAGTTTTTGC CATAACCAAC AAATCTTTAT TGCAAAGAGA
  AATGTTCTGA ATCTTGAGGG TCCTCCACAT TTGCTGAAAA TAATGTTTAG TTTACCAATC
  R
  CAGAAATGTG CTTTTGTCAG CATCTCAGTT GGCACCTCCA AGACTGTAGC ACCATTTCCA
  GAAAAGTGAA ACTATATTAG AGGGACTTTT ACCCACTACT TTGCTAACCA AGGCCCAGGG
  AATCATTAAA CTACTACCTT AGCCTGAGTC AGGTCCTTTT GGGGTGATGA AGAGATGGAG
  CTGGGATACC GCCGCGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60423016	NES15924692	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48358607					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60423016	NES15924692	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89926321 () rs orientation: forward

Symbol	Name	Function Class
Tssr34183	transcription start site region 34183	1401 bp upstream
Tssr34184	transcription start site region 34184	534 bp upstream
Tssr34185	transcription start site region 34185	183 bp downstream
Tssr34186	transcription start site region 34186	218 bp downstream
Tssr34187	transcription start site region 34187	1922 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	within coordinates