rs48359191 SNP Detail

Summary

• ID
  rs48359191
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58665349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGTACCCTGG AACTTGTAGT TACAGATGGT GGTGAGCTGC
  CATGTGGCTT CCGACCTAGC TCTCCAGTCT TTGTAATCCA GTTCTGAGTG ACCTAATTTA
  Y
  ATACTAATTT ATATGCCTTC GTCTTTCTCT TCTCAAGTCA CTTAATAACT ATTGGTTCTA
  AACTATTAAT TTCTTATTTC TTCCTATACC CTACATATAC T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146566740	ENSMUSSNP3525817	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48359191					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58665349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	632 bp distal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	1749 bp distal
Rr365894	regulatory region 365894	52 bp proximal
Tssr157271	transcription start site region 157271	1852 bp downstream
Tssr157272	transcription start site region 157272	1836 bp downstream
Tssr157273	transcription start site region 157273	689 bp downstream
Tssr157274	transcription start site region 157274	686 bp downstream
Tssr157275	transcription start site region 157275	654 bp downstream
Tssr157276	transcription start site region 157276	628 bp downstream
Tssr157277	transcription start site region 157277	395 bp downstream
Tssr157278	transcription start site region 157278	219 bp upstream
Tssr157279	transcription start site region 157279	236 bp upstream
Tssr157280	transcription start site region 157280	252 bp upstream
Tssr159961	transcription start site region 159961	1747 bp upstream