rs48359513 SNP Detail

Summary

• ID
  rs48359513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32572979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAATGTC CATAATTCAG
  ATTTGTCAAT ATGCACTAGA CTATGTCCAG TCTTCAATGT CTCTCATGAA GGCATCATTT
  CTGCCTTATC ATTTTGATCT TGCAAATCCA CATGAAGCTT TGCAGTTATG AACTTGCATT
  TGTCCCGAAT CCCGGTCTTT CTAGCAAATT CTTTTAAAGC AGAAGCTCCG GCTGTTGGGT
  Y
  TCTAAACCTA ACTAGGTGTC CTGTGCAGAA CTGAGTCAAG ACCGGCAGAA TTGTGTCCCG
  TTAGCATGCT AAACGTGACC CCAAAGTGCC TTCAAAGCAG TTCTCAGCTG TTTCTGTGGC
  CCACAGAGGA ATGCTTCCTC CTCCAGGTCT GAGAAGGACT GGGCATGGTG GCCTGCTGTC
  CCAGCACTCA GGAGGCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148200790	ENSMUSSNP5043398	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48359513					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32572979 () rs orientation: forward

Symbol	Name	Function Class
Rr609356	regulatory region 609356	1713 bp distal
Rr609357	regulatory region 609357	686 bp distal
Rr609358	regulatory region 609358	997 bp proximal