rs48359844 SNP Detail

Summary

• ID
  rs48359844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:62312843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCAAAATTAA AATTAGGATA TAGGTACAGT ATTACTCCCT
  GTTTGGAAAG TCTTAGAAAA AGAATCTTAG ATTTAGGAAA GAAGAGATTA TTTTATTTTC
  Y
  TAAGATACAT TGGTGTTGTA GGGTACATAA ACACTTTCTG CTTCCTTATC TCCCTTAATA
  ACGAGTCCTT AGATAAGTGG TTCTCAACCT TCCTAATGCT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146702652	ENSMUSSNP5038877	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48359844					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62312843 () rs orientation: forward

Symbol	Name	Function Class
Gcg	glucagon	within coordinates
Rr366692	regulatory region 366692	1111 bp upstream
Tssr24272	transcription start site region 24272	2000 bp upstream
Tssr24273	transcription start site region 24273	1138 bp downstream