rs48359952 SNP Detail

Summary

• ID
  rs48359952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:176650795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGTTTT CCTTTTCCAT
  TGACAAGTCT GTTTAGAAAA TATTGAGTTT TAGAAAACCA CTGCTGCTCC TTGTCATGCT
  AAAACAGGCC TGCATCTAAT CCGGACTTTC TTTAACCCAG AGTGAGTAAG AAGGGGCCAG
  ACCTAGTTAT CACTCAGCAC CAGGTTTGTG TTTAGAAGAA GGTCTGTGTG GAAATCAGAT
  Y
  GGAATGGAGG AAGAGTGGTA CTAAGCTCAC CATGAAGACA ATAGGATTTC ATCTTCCATT
  TCAGACCAGG AAGGCTGGTT CTTTTTAGTG TTATTCATGT AGAGGATGAG TTTCTGTAAG
  TAAAGTAACC ATATTGCATA TTTTGTAACA TGGAGTATTA AGTAATAAAA CTTAAAAGTT
  AATAACATTG GAGAAAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss60349460	NES15854810	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs48359952					SNP	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349460	NES15854810	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176650795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr423912	regulatory region 423912			958 bp distal
Rr423913	regulatory region 423913			within coordinates
Rr423914	regulatory region 423914			743 bp proximal
Rr423915	regulatory region 423915			1923 bp proximal
Sdccag8	serologically defined colon cancer antigen 8			Intron
				Noncoding-Transcript-Variant