rs48361178 SNP Detail

Summary

• ID
  rs48361178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4524004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTAGGG CTGAACGTAT
  TGCTTGGCAT AAGGATTGCA GATCCTGAGC AGAACTTGAG ATGGTGCTTA TGCTCCTGAT
  ACCCAAGGGA TGCCAGGCCA GAGATGAGGA ACCTCGGGTC CCAGGCTTAT CCGGAATCCT
  TGCTTTGTAA ACTGGTACCT GAAGCTCTTC AAAGCCCAGC CCATCCAACT CCAAAGGCTG
  R
  CAACGAGTCC TCAGAACGCG CCCCTTCTCT CCACGTCGCT CTTCTGCCTC TCGTTCCATC
  TCCTGCTTCG CAATCTGCAG CATCAGAGTC TGCGGAATGG TTGGAGCAGA CAACAGAGTC
  CCAAAAAGTA TAAGAATAAC AAATTTCCCT CCATCCTCCA GAGAGACAGA ATATCCGAAC
  ATCCAAGTTT GTGTCTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60964945	NES16164648	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48361178					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60964945	NES16164648	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4524004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	522 bp proximal
Dnaaf3	dynein, axonemal assembly factor 3	1928 bp downstream
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64334	transcription start site region 64334	1594 bp downstream
Tssr64335	transcription start site region 64335	523 bp downstream
Tssr64336	transcription start site region 64336	665 bp upstream
Tssr64337	transcription start site region 64337	808 bp upstream
Tssr70484	transcription start site region 70484	871 bp downstream
Tssr70485	transcription start site region 70485	1422 bp downstream
Tssr70486	transcription start site region 70486	1794 bp downstream
Tssr70487	transcription start site region 70487	1811 bp downstream