rs48362070 SNP Detail

Summary

• ID
  rs48362070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84569579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GAAGCAAACA ATGCCAAGGC AATGGATATT TCCCCAAGGC
  ATCTCATCCG AGAGAAGGGG GAGGCGCCAT CTAGAGGGGC CACTCACAAT TCCCGTGGTT
  Y
  TAAGAACCTG TCTTACCACC CTATAGGACG AGACTGAAGA CCAGACAATG GCTTAGATGT
  GGGCTGCATG GATGTGTGGA TCCTTGGCTC TGTATTTTAT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148458516	ENSMUSSNP3298564	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48362070					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84569579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	1235 bp proximal
Jam2	junction adhesion molecule 2	1432 bp upstream
Rr518531	regulatory region 518531	59 bp distal
Rr518532	regulatory region 518532	19 bp distal
Rr518533	regulatory region 518533	942 bp proximal
Rr518534	regulatory region 518534	1706 bp proximal
Tssr139177	transcription start site region 139177	312 bp upstream
Tssr139178	transcription start site region 139178	961 bp upstream
Tssr139179	transcription start site region 139179	1164 bp upstream
Tssr139180	transcription start site region 139180	1199 bp upstream
Tssr139181	transcription start site region 139181	1395 bp upstream
Tssr139182	transcription start site region 139182	1445 bp upstream
Tssr139183	transcription start site region 139183	1472 bp upstream
Tssr139184	transcription start site region 139184	1484 bp upstream
Tssr139185	transcription start site region 139185	1538 bp upstream
Tssr139186	transcription start site region 139186	1572 bp upstream
Tssr139187	transcription start site region 139187	1610 bp upstream
Tssr139188	transcription start site region 139188	1630 bp upstream
Tssr139189	transcription start site region 139189	1670 bp upstream
Tssr139190	transcription start site region 139190	1737 bp upstream
Tssr141866	transcription start site region 141866	77 bp upstream