rs48362947 SNP Detail

Summary

• ID
  rs48362947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179785683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCCTGGGA AAAAAATAGC ACCTGCAATC AATTCGTATA
  TTTCTATTAC TAGTTAGACA TTTAAAGAGA ACCGACAGGG TTCACCTTCC TCGACAACTG
  R
  TTTCTAATTG TTTAAAAAAA TTCATTTTAC CTCTTTTATA CGTGCATGCA CATATCCCTG
  CGTGATTGTG GCGATCAGAG GGCAAGGCAT GAGAATTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146372686	ENSMUSSNP5954247	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48362947					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179785683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1100	CpG island 1100	1008 bp proximal
Rr20822	regulatory region 20822	683 bp distal
Rr29078	regulatory region 29078	717 bp proximal
Tssr10433	transcription start site region 10433	1854 bp upstream
Tssr10434	transcription start site region 10434	1866 bp upstream