rs48363777 SNP Detail

Summary

• ID
  rs48363777
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:90407292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGAGTAG GATCTTGTCT
  GCCCTTGTTT ATTTGCTGCT TCTGTTTTCC ATATATATAT ATATATATAT ATATATATAT
  ATATATATAT ATATATATCA TTCTTTCTTG CTATGCTTCA AGTCATAGCA ACGATAAAAA
  GTCAAAAGTA GTCTCTTTAG AAGGCTTAGT TTGTATGTGT CCTTAGAAAC CAATAAAGGA
  R
  CACTTTTAAT GCTAATAAAT CCAGAGAGAA CATGATACCT GGTAAAGTGC CATTGCAACC
  AAAGCTACTT AATGCTTGAA TACACTTAGA TTTTATAGGG TGCAGTATTT TTAAACTACA
  CTCCTAAGGA CTGATGAAAA ACATAATATC ATCTCACAGA TCACATAGGC ACAGCTTAAC
  TATAGTAACT TGGAGTCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss62969023	NES17419708	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs48363777					SNP	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62969023	NES17419708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:90407292 () rs orientation: forward

Symbol	Name	Function Class
Nrxn1	neurexin I	within coordinates
Rr336618	regulatory region 336618	509 bp proximal