rs48364403 SNP Detail

Summary

• ID
  rs48364403
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177809018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGTTCCCT GTCCTGACTT
  CCTTCAGTGA TAGACTGTGA CCCCCTAAAC CTGTTCTACC CTAAGCTGCT TTCTGTCAGA
  GCATGTGTTA TCACAGCAAC AGAAAAACTG CCCAACAAGT CTCTGGGCTT TAAGTTCTAC
  TGAAACGATT ATTTTAGTCA GATTAATGGT TGTGACTCCA TTTCATTTAT GCAAATGCCT
  A
  CTCAACATCT CATGAGCCTC TAAAAGGCAC TGAAAATATA ACATGACCTA ACAGTAATTT
  CATTTCCCTT TCTAACCTGT TTCTTCCTCA AATGTTTGAT ATATTATGAA TAGCATACTA
  TCTACCCAAA TGTGTGAAAA ATCTAGGACC TATTTTTGAG AGTGTACCCA ACAGAAAGAA
  ACTCAAGCAA TTTTTATTTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146351710	ENSMUSSNP7163535	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48364403					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177809018 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	1971 bp upstream
Cpgi1085	CpG island 1085	1636 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr14372	regulatory region 14372	1218 bp distal
Rr25806	regulatory region 25806	within coordinates
Rr29061	regulatory region 29061	1382 bp proximal
Rr396636	regulatory region 396636	1592 bp upstream
Tssr10371	transcription start site region 10371	1975 bp upstream