rs48364413 SNP Detail

Summary

• ID
  rs48364413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96804236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGACTGCC ACCCTTCCCA
  CATCTGATGG CTAATTAACA AGTTTGACAT TCCTATTTGA AATGTAATCT TATAGTCTGA
  TGGCCTACAG AGATATTTCT CATGGTAAAA CTATAGAGCA AAATGAAAAC TATTACCCAT
  AACAATCAGT CACAAAAACT AGACCCCGGG AGATGGGCCT GTGGATAATG CACTTGCATC
  Y
  AAGCCTCACT GCTTCTAACA CTGCAGACTG AGCTCTGACC GCCACGCTCA GGCCACAGTA
  CACACCAGTG CACACAAACA CACACAATAG AATACAAATG ATGACAAGAA ACCAACTAAC
  AGCCCACTGA TTGTCAGCAA GAATTCAAAT AGATCTCACA CATCTACTAG GAAAGTGACT
  TATTGACTGA TGACACCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss61944124	NES17104377	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs48364413					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61944124	NES17104377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96804236 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	835 bp distal
Rr281795	regulatory region 281795	within coordinates
Tssr123569	transcription start site region 123569	1001 bp upstream