rs48364662 SNP Detail

Summary

• ID
  rs48364662
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:37805581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTTACT GGAGTGCTCC
  CCTATACAAC CCAGGACCAC CTTCTGGGGT CGGGGAGGGT AGTGGTGGCG AACTGTCCAC
  ATGTGCTGGA ACCTGTCAAT CAAGATAATA TTCATGGGCC AATCTGATGG AGGCAATTCC
  TCAGTCAAGG CTCCCTCTTC TCAGGGGATT CCGGTTTGTG TCAAGTTGAC AAACACTAAG
  M
  AGCTCCAAGC AGATGGAAGA TTTTCTGATA AAATCTGGAA GCTATAAACC AACTTTCACA
  ACTAGCTGTT TAAAGAGCAA TGTTTCAGGG GCAGTGCTTG TCCGTCAATG AGGAAAGCCC
  ACACCGCCTG CCCCTACCAC CACATGACAA TGAGTTGAAC CTCCAGAAAC CATGAGCCAA
  GATAAATCTT TTTTTTTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61139049	NES16653114	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48364662					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61139049	NES16653114	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:37805581 () rs orientation: forward

Symbol	Name	Function Class
D5Mit354	DNA Segment, Chr 5, Massachusetts Institute of Technology 354	457 bp distal
Stk32b	serine/threonine kinase 32B	within coordinates