rs48365956 SNP Detail

Summary

• ID
  rs48365956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:99450178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTAGTCT CGGAGCCCGG ACCTCAACAG CAGAGCACAG
  CAAAGCGGTT TAAATAACCA TACACAATAG CGCGAGTTGC AGCTGATGTG AAAACCTCCA
  Y
  TGCCAAGAAG CAAGCGGTGT TGGCAGGTGC CCTGGTGGTA GGGACTTGAC AGAAGACGCA
  CAGCCCTGGT CTGGCAGCTC TGTGCTGTGG CAGCTTAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61443618	NES16826048	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	T	C	T	T	T	C	T	T
ss136848830	ENSMUSSNP6374216	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48365956					SNP	T	T	T	T	T	C	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443618	NES16826048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99450178 () rs orientation: forward

Symbol	Name	Function Class
Armc8	armadillo repeat containing 8	Intron
Cpgi22196	CpG island 22196	within coordinates
Rr401625	regulatory region 401625	680 bp upstream
Rr685420	regulatory region 685420	within coordinates
Rr685421	regulatory region 685421	514 bp proximal
Tssr91072	transcription start site region 91072	515 bp downstream
Tssr91073	transcription start site region 91073	724 bp downstream