rs48367458 SNP Detail

Summary

• ID
  rs48367458
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54389226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAATGTC CTTCTAACTT
  TTCTTGAAAG GCATTCTTCA GAAAGGGCAC TTCTGAGAAG GTCACACAGT AAGTCAGCGA
  GGCTTCTGAA GACACCCTGC CAGGACTATA CCACCTCCAG CGCCTACTTA TCAAACACAG
  ATTAATATAG CCCTAAGGGC ATTGTTCTCA AAACTATTCA GAGAGAATGC TAGTTAAATA
  K
  GAAAAAATGG CTGCTAAATT TAGCTAAAGA CTTGTTCTAT CAATCAATGG TTTAAAAAAA
  ATCTAAAGAC AATATCTTTT CACATTTTCA AATGCGTGTG AGTATGTGTT TGTGTGTATG
  TGAGTATGTG TGTGTGTTTG AACATACTAG CATGTGTTGT CCACAAACCA CAACATACAT
  GTGAGGTCAG AAGACAACTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62393803	NES17237190	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48367458					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393803	NES17237190	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54389226 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Gm62807	predicted gene, 62807	1384 bp upstream
Rr492143	regulatory region 492143	894 bp proximal
Rr492144	regulatory region 492144	1260 bp proximal
Rr492145	regulatory region 492145	1395 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Tssr125542	transcription start site region 125542	1377 bp upstream
Tssr125543	transcription start site region 125543	1421 bp upstream
Tssr125544	transcription start site region 125544	1437 bp upstream
Tssr125545	transcription start site region 125545	1484 bp upstream
Tssr128540	transcription start site region 128540	359 bp upstream