rs48369225 SNP Detail

Summary

• ID
  rs48369225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151351733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTTCAC ACTCTTTCAG
  AGTTCAAGAG TTGTGGTCGA GCTCTGCTTA CCTTACAACT TCAGCTCCAG GGACATCTCT
  CAAGTGCAAA GCAGGATGCC AAGGTACAGC AGGGTTGATT TTCCCCTCAT ACAGGTTTCA
  GCTGTCAGAG CATCCAGCTC CTCTGGAAGA ACCAGCCCCC TCTTGCCGAA CACCAATAAG
  R
  AAGCCACACA GCACATGTGG GCAGAGGCTT CCCTGGAAGC CAGTCGCAGT CTGCACACAT
  TCTCTGGGAC AGAGGTGCCA AATGAACTTG GCCCATGTCA CACAAAGCGT CCCATTATGA
  TATCCTGAGC ATCTATTGAG GAGGAAAGAG GTTCTGTGAA ACTCTTGCCA ATCTGGAATT
  TTCTTGCTCT TGTTAGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144728524	ENSMUSSNP6296918	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48369225					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151351733 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	58 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	105 bp upstream
Rr117371	regulatory region 117371	1133 bp distal
Rr378823	regulatory region 378823	1249 bp upstream
Tssr54686	transcription start site region 54686	106 bp upstream
Tssr54687	transcription start site region 54687	81 bp upstream