rs48369992 SNP Detail

Summary

• ID
  rs48369992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51372138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAGAAGG AAGCTTCCAG
  ACTCCCCAAG TTCTACAGGC CACAGCAGAA ATGATATAAT GTGATAAAGT TCCAAAAGGA
  TCTCTCTCAC TGAAAGAGAT ACTGGATGGA ACCAGGAGTC ACTTTATCCA CCTCATTGTC
  TCCTTGCTGC AGAACCCACA AAATGAAGAC CCCCAGGGAA TTGTCTACGC CCAGGTAAAA
  Y
  CCTCCAGGCT TCAGAAGGTA GGAATTAATG TTTCCCCACT GTCAGGAACC TTTCCCCTCA
  GGTTCATTCT AGCCCCATAA GTTACTAACA CTAAACACCT TCTTCCAACT CTATCCAACC
  CCAGGACACT GCATGCAAAG AGACCCAGGA TGTAACCTAT GCCCAGTTGT GCATCAGGAC
  ACAGGAACAG AACAACAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52288548	NES15304618	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48369992					SNP	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288548	NES15304618	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51372138 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93279	transcription start site region 93279	1897 bp downstream
Tssr93280	transcription start site region 93280	1450 bp downstream
Tssr93281	transcription start site region 93281	1402 bp downstream
Tssr93282	transcription start site region 93282	1384 bp downstream
Tssr93283	transcription start site region 93283	1294 bp downstream
Tssr93284	transcription start site region 93284	926 bp downstream
Tssr93285	transcription start site region 93285	742 bp downstream
Tssr93286	transcription start site region 93286	639 bp downstream
Tssr93287	transcription start site region 93287	255 bp downstream
Tssr93288	transcription start site region 93288	4 bp downstream
Tssr93289	transcription start site region 93289	43 bp upstream
Tssr97556	transcription start site region 97556	1531 bp upstream
Tssr97557	transcription start site region 97557	1194 bp upstream
Tssr97558	transcription start site region 97558	within coordinates
Tssr97559	transcription start site region 97559	449 bp downstream
Tssr97560	transcription start site region 97560	545 bp downstream