rs48371923 SNP Detail

Summary

• ID
  rs48371923
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48491807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTCC ATGCATTTGT CTAGGTATAT CTTACAAAAT GAGAATGAGA
  TTACATATAA TACCTCCTCA CCAGCTAAGG CAGCTCAACA GCCTTGTTTG TAAGTGATCA
  GAACTCTATG CCTTACATAC ATCAGGACTC AAAACCCAAA ATAGAAACAC ATAAAGATTC
  W
  TTTAAGAGAC GTACATCCGT TCCTGAAGAA GGGAACTGAT ACAGCAATTA GAGCTATGCA
  AGGAAAATGT CTTCCAATGC TCATTGCTGA AAAGGTAGAG GTATCATAGT GTGTCCTGAA
  TCGGAAAACA TGGGTTCTGA TTGTCATTTG TCGCTGGAAC TTAAAGAAAA TAAATGTTAA
  TATCTTCTTG TGCACAGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149207692	ENSMUSSNP6723381	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48371923					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48491807 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	within coordinates
Rr646923	regulatory region 646923	1171 bp distal
Rr646924	regulatory region 646924	256 bp proximal
Tssr72622	transcription start site region 72622	1582 bp downstream
Tssr72623	transcription start site region 72623	1604 bp downstream