rs48372653 SNP Detail

Summary

• ID
  rs48372653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165917258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTTGGCTTTC CAATGGGATT TCCAAAGGAA AAGCTGTGGA
  ATTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTTTA TTGCCCCTCT
  Y
  TGGGGGTCAC AGGGGCTGAG AGCAGAAAGC TGTCTCCGTG GCTTTCCTGT GTGAGGCCTT
  GTCTGCAACG GACTCTTGTT TGAGAAGTAC AAGCCAGGCC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146012347	ENSMUSSNP5966599	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48372653					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165917258 () rs orientation: forward

Symbol	Name	Function Class
Rr422527	regulatory region 422527	705 bp distal
Rr422528	regulatory region 422528	32 bp proximal