rs48373474 SNP Detail

Summary

• ID
  rs48373474
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58955960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGCCGC GCGGACAGTC
  CTCGGTGGCC TGGGCCGGCA CTGTCCTGCT ACCGCAGTTG CTCCCCAGGT GGGATGTGCC
  GCGCCACCTG CCCACCTCCC CTCTCCCCCC GCGCCCAGCG GCCGGGGAGG ATTCTGCAGC
  ATCATTGGGG CCCCAGCGCT GCCGCAGCCT CTTTGGAGGG TCCTTGGCTT GGCCTATGCC
  W
  TGGAATCTGC TCTCAAAGAC CCGTTACCGA CTTCTCATGC CTCGGCCTCA GGCTTGAAGG
  GAGGGCGGGC ACACGGGGGG GGGGCACTAA GGGGCAAGTT GATGGCGGGG CGGGAGCTGG
  GCACTCAGAC ATTCATTCTC CAGGCTTGGG GTTCAGGGTG AGGAGAGCGC GGAGGGACTG
  TGTCCCAGTT GGTGGTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52643910	NES15465414	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48373474					SNP	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52643910	NES15465414	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58955960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	within coordinates
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates
Rr273002	regulatory region 273002	1560 bp distal
Rr281494	regulatory region 281494	within coordinates
Tssr120082	transcription start site region 120082	1524 bp downstream
Tssr120083	transcription start site region 120083	1491 bp downstream
Tssr120084	transcription start site region 120084	446 bp downstream
Tssr120085	transcription start site region 120085	308 bp downstream
Tssr120086	transcription start site region 120086	263 bp downstream
Tssr120087	transcription start site region 120087	244 bp downstream
Tssr120088	transcription start site region 120088	117 bp upstream
Tssr120089	transcription start site region 120089	537 bp upstream