rs48374709 SNP Detail

Summary

• ID
  rs48374709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4761788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTT GATTAGAGAG ACACACATCA
  R
  GAGCTGGAAG CATAGCCAAT GGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61339095	NES16947235	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		G	G	G	G		A
ss323874779	CHEV_12_4718594	CHEVERUD	SCREENING_POP	f	SNP					A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48374709					SNP	G	G	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339095	NES16947235	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4761788 () rs orientation: forward

Symbol	Name	Function Class
Fam228a	family with sequence similarity 228, member A	1882 bp downstream
Gm53750	predicted gene, 53750	within coordinates
Itsn2	intersectin 2	within coordinates
Rr260648	regulatory region 260648	1988 bp distal
Rr260649	regulatory region 260649	1013 bp proximal
Tssr112576	transcription start site region 112576	548 bp upstream
Tssr112577	transcription start site region 112577	567 bp upstream
Tssr115645	transcription start site region 115645	427 bp downstream