rs48374901 SNP Detail

Summary

• ID
  rs48374901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:68831262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTGAGG TTGTGTCATT
  CTGAGGTCAT CTGAGTCAAT GGGGAGAGAA ACTGAAGAAC TCAAATCTTC TATTTGTGGA
  TTATCTCCAG TTCCAACAAA ACAAAAAAGT ACCTTCAATA GCTCAAGAGT CCTTGTCTGT
  CAAACATGCA CATGAGAAAT GCTTTCCAGC CATGTTCTTA GGGATTCCAC ACTGAAACCA
  Y
  ACAGCTTCTC AAAGTGGCAC AGAACACTAA CAATGTGAAA TGCTGGTGTT GTACCATTAC
  ACAGAAAATT TTGATGCCTA CATTTGGTCA AAAGCCATCA TTACATGATG AATACTTTCA
  AAGTTAATTG TTTTGTGCAC AGGAAGAAAA AATTTTATTA CTTCCTTATT TAATATCACT
  TGAGACAGAA TTAATGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62443661	NES17255359	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48374901					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62443661	NES17255359	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:68831262 () rs orientation: forward

Symbol	Name	Function Class
Rr296117	regulatory region 296117	within coordinates
Tssr126359	transcription start site region 126359	481 bp upstream