rs48375047 SNP Detail

Summary

• ID
  rs48375047
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79177513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCG GGGGCTGGTT GGAGGCGTGT
  H
  CGAGAGATGC TGACGTCACA GGGCG                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61653374	NES17602660	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C		A	C	C	A		C
ss324108026	CHEV_12_80231726	CHEVERUD	SCREENING_POP	f	SNP								T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48375047					SNP	C	C	C	C	C	C	C	T	A	C	C	A	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61653374	NES17602660	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79177513 () rs orientation: forward

Symbol	Name	Function Class
Arg2	arginase type II	49 bp upstream
Cpgi4801	CpG island 4801	within coordinates
Rr468550	regulatory region 468550	within coordinates
Rr468551	regulatory region 468551	1406 bp proximal
Tssr3873	transcription start site region 3873	10 bp upstream
Tssr114077	transcription start site region 114077	61 bp upstream
Tssr114078	transcription start site region 114078	1625 bp upstream
Tssr116820	transcription start site region 116820	1429 bp downstream
Tssr116821	transcription start site region 116821	1454 bp downstream