rs48375167 SNP Detail

Summary

• ID
  rs48375167
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69871465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG GTCCCGCCCC GCAGTAACCT
  C
  GTGCGCGTGC GTAACGCTGC ACCCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323732457	CHEV_11_69794141	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48375167					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69871465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3163	CpG island 3163	within coordinates
Ctdnep1	CTD nuclear envelope phosphatase 1	529 bp upstream
Elp5	elongator acetyltransferase complex subunit 5	within coordinates
Gm56228	predicted gene, 56228	53 bp upstream
Rr369263	regulatory region 369263	553 bp downstream
Rr402684	regulatory region 402684	within coordinates
Rr450182	regulatory region 450182	346 bp distal
Rr450183	regulatory region 450183	27 bp proximal
Rr450184	regulatory region 450184	603 bp proximal
Tssr102587	transcription start site region 102587	112 bp upstream
Tssr102588	transcription start site region 102588	129 bp upstream
Tssr102589	transcription start site region 102589	141 bp upstream
Tssr102590	transcription start site region 102590	191 bp upstream
Tssr102591	transcription start site region 102591	400 bp upstream
Tssr102592	transcription start site region 102592	488 bp upstream
Tssr102593	transcription start site region 102593	616 bp upstream
Tssr102594	transcription start site region 102594	693 bp upstream
Tssr102595	transcription start site region 102595	742 bp upstream
Tssr102596	transcription start site region 102596	821 bp upstream
Tssr102597	transcription start site region 102597	836 bp upstream
Tssr102598	transcription start site region 102598	852 bp upstream
Tssr102599	transcription start site region 102599	883 bp upstream
Tssr108900	transcription start site region 108900	410 bp upstream
Tssr108901	transcription start site region 108901	368 bp upstream
Tssr108902	transcription start site region 108902	349 bp upstream
Tssr108903	transcription start site region 108903	64 bp upstream
Tssr108904	transcription start site region 108904	589 bp downstream
Tssr108905	transcription start site region 108905	603 bp downstream
Tssr108906	transcription start site region 108906	642 bp downstream
Tssr108907	transcription start site region 108907	1991 bp downstream