rs48375507 SNP Detail

Summary

• ID
  rs48375507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70415263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCTCTTTC CACTGATGGC CGACTAGGCT ATCTTCTGAT
  TCATATGCAG CTAGAGACAC GAGCTCCAGG GGGGGTATTG GTTAGTTCAT ATTGTTGTTC
  Y
  ACCTATAGGA TTGCAGATCC CTTCAGCTCC TTGAGTACCT TCCCTAGCTC CTCCATTGGG
  GGCCCTGTGA TCCATCCAAT AGCTGACTGT GAGCATCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132372272	ENSMUSSNP3883204	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48375507					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70415263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	816 bp proximal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	930 bp upstream
Rr369269	regulatory region 369269	627 bp upstream
Rr450320	regulatory region 450320	886 bp distal
Rr450321	regulatory region 450321	847 bp distal
Rr450322	regulatory region 450322	459 bp proximal
Tssr102728	transcription start site region 102728	924 bp upstream
Tssr102729	transcription start site region 102729	1472 bp upstream
Tssr102730	transcription start site region 102730	1517 bp upstream
Tssr102731	transcription start site region 102731	1544 bp upstream