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rs48375863 SNP Detail
Summary
  • ID
    rs48375863
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:82747324 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AACAACAGCC TTGCTACGTT
    ACTCAGTCCT TACCGATCTG CAAAGCCAAA CTCCCATTTT TCCAATTTGA AGACCAGACT
    TCCATTTCAT CATGCTTAGC ATGTCTAACT GGCCTGAAAG ATAATAATGA ATTGGATTCT
    CCCTACAACT CTCCTCCCCA TAGTAACCAA CTTACGGTAA CTGTGTTAGG TTCAGAACTG
    Y
    AAGGTCCTGT AATTAAGCTT GGTCAGGAGC TTTGAGCTCT GGCTTTTAAT CTCACTTTTT
    TTTTTTTTTT TTTTTGGTTT TTTTTTTTTT TTTGGTTTTT CAAGACAGTG TTTCTCTGTA
    TAGCCCTGGC TGTCCTGGAA CTCACGTTGT AGACCAGGCT GGCCTCGAAC TCAGAAATTC
    GCCTGCCTCT GCCTCCCAAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss61434565 NES16814253 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs48375863 SNP C C C C C C T C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61434565 NES16814253 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:82747324 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm38553 predicted gene, 38553 within coordinates
Phip pleckstrin homology domain interacting protein 888 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory