rs48375866 SNP Detail

Summary

• ID
  rs48375866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:48812828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATAAGGCA TGGCCTAAAT ATGATAAGAG ATTTGGTAAA
  CAACAGCTGT ATGAAGATAC TTCTGGTTTT ACATGGCATA TACTATTAAG CTTGTGTTTT
  R
  ACTATGAATA CAAGTGGTAA TGATAAAAGT ATGGATCAGT AAACAAATGA ATCATTAGTA
  GTTTATTTGT GCCATCCATA ACAGTATGTG CTATACTTTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60458509	NES16448035	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48375866					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458509	NES16448035	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48812828 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A			1720 bp upstream
Cpgi8305	CpG island 8305			1030 bp proximal
Dzip3	DAZ interacting protein 3, zinc finger			Intron
				Noncoding-Transcript-Variant
Rr391755	regulatory region 391755			874 bp upstream
Rr516660	regulatory region 516660			1978 bp distal
Rr516661	regulatory region 516661			within coordinates
Rr516662	regulatory region 516662			1466 bp proximal
Rr516663	regulatory region 516663			1734 bp proximal
Rr516664	regulatory region 516664			1975 bp proximal
Tssr138707	transcription start site region 138707			1732 bp upstream
Tssr141318	transcription start site region 141318			1466 bp downstream
Tssr141319	transcription start site region 141319			1616 bp downstream