rs48376379 SNP Detail

Summary

• ID
  rs48376379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45219264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG CTGAACTCAT AACAAAATTC
  R
  TAAATTACCA GGAACAAATG CTAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148077940	ENSMUSSNP6514331	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss325166281	CHEV_16_45399014	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48376379					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45219264 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
D16Mit84	DNA segment, Chr 16, Massachusetts Institute of Technology 84	1065 bp distal
Rr318478	regulatory region 318478	1337 bp proximal
Rr327058	regulatory region 327058	864 bp distal
Rr327059	regulatory region 327059	138 bp proximal
Tssr141233	transcription start site region 141233	1756 bp upstream