rs48376407 SNP Detail

Summary

• ID
  rs48376407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172696607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGGCAG ACAAGAGTCA
  GACATTCTTA GAGGTAACCA TCAGGATGGG TTGTTCAGAG TCTGGCATAA CCCTATACAT
  TGCCACTGCG TGACAGATGC CAGCTATTTG AGATAGAATT GGTTGGATCC AGGGGCAGCC
  TGTGGGTGCA GTCTTTACCC TCACGGAACT CCAAGCACTG CATAAAATTC TTCTACTTAG
  R
  ATCTCGTGTG GCCCTGAATG GCTTTGAACA TGCACTGCAG CTGACGATGC CTTGAACTTC
  TCATCCTCCT GCCTCTGTCT TCCAGATGCC GGGCTGCAGC TTAAAGGTCC TAGTGAGGTC
  TCAACATTCT CAATGGCTTC TCAGCAAAAG GCCCCAAGCT CCCATGGTGC ATCAGGCTCT
  GCCTTCAGCG GTGCTCTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148324283	ENSMUSSNP5281650	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320620552	CHEV_2_172680315	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48376407					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172696607 () rs orientation: forward

Symbol	Name	Function Class
Gm36254	predicted gene, 36254	within coordinates
Rr571755	regulatory region 571755	458 bp distal
Rr571756	regulatory region 571756	260 bp distal
Rr571757	regulatory region 571757	1439 bp proximal