rs48377118 SNP Detail

Summary

• ID
  rs48377118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67055155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGTAGA CAAAATTATT
  CAGTAATAAA GCCAGTGTTC TGAATCCAAT ACAAAATTAG TTGCTGATAC ATAGCTCAAA
  TATAAACAGT GTACTTTATT AAAGCTCAAT AGTGGTCTTA CCATGCTGTC TTTCAGACTT
  AAGCTGAGAC CCAGGACAGC ATAGAACTGT CTCATTATGA ATCCAAAATG TTATGTAATG
  R
  TTTTAGTCAG AAGTTCTAGT TCCGTTGCCT TCTTCCCTTT TCTTCTGTTT CTGATGCAGC
  TCTCGGACTA TATGCAGTGG CCACCATGAA GTCTGAAGGA TAGGAGTAAA TATATACATT
  TGTACACTGG CACATTGTAA AGGGGATTCA TTAAACTTCA CCCTGAGAAG TTTCAGCGCC
  AGGGTGAAAG ATGCTAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss52646861	NES15464937	PERLEGEN	MM_PANEL2	f	SNP		A	A	G		A		A	A	A		A
ss149258989	ENSMUSSNP1688440	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			A
ss324388723	CHEV_13_67008027	CHEVERUD	SCREENING_POP	f	SNP							G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs48377118					SNP	G	A	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52646861	NES15464937	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67055155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5796	CpG island 5796	1718 bp distal
Mterf3	mitochondrial transcription termination factor 3	within coordinates
Ramacl	RNA guanine-7 methyltransferase activating subunit like	within coordinates
Rr273407	regulatory region 273407	446 bp proximal
Rr281575	regulatory region 281575	954 bp distal
Rr369737	regulatory region 369737	1659 bp downstream
Tssr123084	transcription start site region 123084	1721 bp upstream
Uqcrb	ubiquinol-cytochrome c reductase binding protein	1713 bp upstream