rs48377662 SNP Detail

Summary

• ID
  rs48377662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77185066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCAGTT GTTTAAGGGG
  CCCTCATTTG GAGCTATGAT TCACTGGAAA CAAACAGTGT GCCATGAGTC TAGTTTCTAA
  TGAGAAGCTG TCTGAAGCCC AGATACTGTG CATTTGAAAT CACATCTAAG TTATTGGACC
  TTTTAAGAAG CTTGTATTTG TGACAAATGT GAAGTCATTA AAAAGAAGTC TTTGAAGTTT
  Y
  CTCTCAAGGA GCCTTTAAGT CTTGACATAC ATAACTTCTA GACAGAAAAT AAATGAAGTA
  TAGAAAAATT TACAGAAATT CACAGTGGTT GAATATTTGG AGCTTTTGTT CACTATTCAA
  ATGTCCCCTT GATGCTAAGA TTAAAACAGC TTTTACAATA AGCAGGTTAC ACTGCACACA
  GTTAAAGCAG TCACGATTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136655338	ENSMUSSNP6997546	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48377662					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77185066 () rs orientation: forward

Symbol	Name	Function Class
Gm53504	predicted gene, 53504	606 bp upstream
Mlip	muscular LMNA-interacting protein	within coordinates
Rr683300	regulatory region 683300	623 bp distal