rs48377950 SNP Detail

Summary

• ID
  rs48377950
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125565155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCTGTTT CGTACCCAAG
  CAGAAGGTTT TCAGACCCAG AAAAGTGATG GGGTTGGCCA GCTTCATGCT TGCCATACGG
  GGAATCAAGG TGCACAGCGC CGTGGGGCTC TCCTGGCTGG ACACAGTGGC ATCCTCAGTC
  GGCAGGTGAG GGGCCAGGGC TGGGTAGGGA GGCGGCGACG AGCCCTTGTT TCCAACGGAG
  M
  CTCCGGGGCT CCCTTCGTCC AAAGACGTGA TGGACTCGTT CCGAAAGCGG CTGTACTTGG
  TCCTGTGAAG CATCCCCAGG TGCCCAAAGA GTCCTACATA CAGCGTGAGT CCTGCCTGGC
  TGTCCTGGCT GCGTTCTCGC ATAGCCTTAG CAGTGCTGAG ACTGGGCACC GCAGCCTAAA
  GTGCCTCGCA GTCCGGTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147486031	ENSMUSSNP7026529	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320497834	CHEV_2_125548971	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48377950					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125565155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	within coordinates
Rr367290	regulatory region 367290	1394 bp upstream
Rr564270	regulatory region 564270	142 bp proximal
Rr564271	regulatory region 564271	624 bp proximal
Rr564272	regulatory region 564272	1643 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	within coordinates
Tssr26008	transcription start site region 26008	289 bp downstream
Tssr26009	transcription start site region 26009	422 bp downstream
Tssr26010	transcription start site region 26010	472 bp downstream