rs48378454 SNP Detail

Summary

• ID
  rs48378454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103252874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTGTTTG GAGAGTAGGA
  TGGAAGGACA GACTGCAACT TTGGTCAGTG GGGGCAGTGG GTGGGGTTTA TTGCACTTGC
  AACAGAGTTT AAATAAGTTG GGGTGGGTTC TGGAGGAGAG GGGAGGGTTG GCTAGGGAGA
  GAGGGGCAGC GTCAGTGCAG CTGGTGGGCA GAACCCAGGT CATACAGGCC TGGGGCTTCC
  Y
  GTTCTCTCTG GGGAATGAGT GGCCAGGCTG AGGTTCCAGG TCTGTTTGCC AATGTGGCCT
  GGTTAGGGTC CTGGGCAATT CCTGACTTGT CCTAAGTCAG GGATAAATAG GTTTCTAAGC
  CCAGGTCTGC AGCTGACCCA AATGCCACCT TGGGTCTGCT AGCATAGGTT CTTAGAATCC
  GAGACTGGGC TCCAGATCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss52584131	NES15645635	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48378454					SNP	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52584131	NES15645635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103252874 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	within coordinates
Rr404654	regulatory region 404654	1678 bp downstream
Rr510620	regulatory region 510620	1413 bp distal
Rr510621	regulatory region 510621	1825 bp distal
Rr510622	regulatory region 510622	838 bp distal
Tssr136772	transcription start site region 136772	111 bp downstream
Tssr136773	transcription start site region 136773	191 bp downstream
Tssr136774	transcription start site region 136774	265 bp downstream
Tssr136775	transcription start site region 136775	283 bp downstream
Tssr136776	transcription start site region 136776	327 bp downstream
Tssr136777	transcription start site region 136777	359 bp downstream