rs48378813 SNP Detail

Summary

• ID
  rs48378813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:13410120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATTTCT CTTTTGGTAG
  CCCACATGGT ATTTTCAATA CTAAAGACAT TATTATGGAG AGGGGAAGGT TCTGTGTAGG
  TACCAGTTAA ACCTCTCTAT GTCCAATTTG TTTAATAGGT TTTCTCTTAA ATCATAGGAC
  CCTACTATCA GCTTGTGGAG ATAAAGAAAA TGTATAAATT ACTAAGAGAG CAATGAATCA
  R
  GTAGATCTAG CATCTTCTAC CATAGAATAT TCATTCAAGT TTTGAAAGTT ACATGAATTT
  ATGAAGAAAT ATATAAAGAA ATGTTTATTG TCATGTACTA TGAAATGTAA ATTAGACAGA
  GAAAAGAAGA TCCATTTGTG TTTTGAGTAT CATTCAGCAG TTCATAGATT CCTCAGAAAT
  CTATTTCTGA TAGATATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss63224366	NES17473037	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs48378813					SNP	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63224366	NES17473037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:13410120 () rs orientation: forward

Symbol	Name	Function Class
Or5b115-ps1	olfactory receptor family 5 subfamily B member 115, pseudogene 1	1399 bp downstream