rs48380190 SNP Detail

Summary

• ID
  rs48380190
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40643970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA ATTTTTAAAA ATAATAATAA
  T
  TTTCCTTTTA CCCCTCCATG TTCTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136336825	ENSMUSSNP3007774	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322918988	CHEV_9_40540757	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48380190					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40643970 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	1569 bp distal
D9Mit253	DNA segment, Chr 9, Massachusetts Institute of Technology 253	1404 bp proximal
Gm68229	predicted gene, 68229	1072 bp upstream
Gm68234	predicted gene, 68234	1005 bp downstream
Rr1916	regulatory region 1916	267 bp downstream
Rr676903	regulatory region 676903	1717 bp distal
Rr676904	regulatory region 676904	1083 bp distal
Rr676905	regulatory region 676905	704 bp distal
Rr676906	regulatory region 676906	5 bp distal
Tssr84462	transcription start site region 84462	1696 bp downstream
Tssr84463	transcription start site region 84463	1660 bp downstream