rs48380546 SNP Detail

Summary

• ID
  rs48380546
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33036401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTGTGTA TACTAACGCC
  CTAGAGGAAA TTCAAGTTTT CAGTTCATGT ATCAAGTACA TGCAGAGGGC ATTTAATAAG
  TCTCTATAAC GATCCCTTAG AAGTTGTCTC AGTTCTACAA CCTTGAAGGC CTGCAAACCG
  ACCTCCGCCC CTAGCAGGCT GGCAGTTATA GGCCTGTATA GTCCAACTGG GTCAGGTTCA
  W
  AACTTGGGCC AACAAACCAC AGGGGAGGCG CCTGGGAAAA CGAAATTATC AGGTGGAAGG
  GAAAGAGCCA GAAGCCAGAA ATTAGCAGCA GGGTCAGGAA TGACTTGAAT GGTAATACCA
  GAAGAGGGGC AGGGAATAAC AGAGGCAAAG AAGAGTAATC CTTAAAACAC CAATTCACTC
  TGAGAAAGAA CTGTGCGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60876109	NES15978856	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48380546					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876109	NES15978856	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33036401 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	within coordinates
Cpgi17277	CpG island 17277	288 bp proximal
Rr146107	regulatory region 146107	within coordinates
Rr399607	regulatory region 399607	768 bp upstream
Tssr60218	transcription start site region 60218	706 bp downstream
Tssr60219	transcription start site region 60219	790 bp downstream