rs48380686 SNP Detail

Summary

• ID
  rs48380686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:117495518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCACGTG ATCTCGTAAA
  TCTCTCCCTT CTTTGTCGGT GGTCTGAAGG AAGGCAGTGG ATCACAGGGG TGACAAGTTC
  TATGAAAATA ACAAATTTGA GAAAGACTAA TTATGACCCA TGAGTTCAAA CAGTGTGATC
  CAGACAGGCC ACCCTGGACA GGTAACATTG ACGCAAAGAT GGGGGCCAAT GCGGCCTCCT
  R
  TGGTAGTCGA GTATGCGTTA GCCATGGATC ATGAAAGGCC GTGGGAGGGT TTGAGAGGAG
  AAGCTGCACA GATTTATACA CTAACAATGG TCTTAGACTG AGCCTAACCT GTCAATGACA
  AAGCCACAGG GCACTAGAGA TGGGAGCAGC AGCCAGCAGT GAGGAAAGCA TTTAGCCAAG
  CATCCTCGAG CGCTGCTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61234295	NES16850649	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48380686					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61234295	NES16850649	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:117495518 () rs orientation: forward

Symbol	Name	Function Class
Rbms3	RNA binding motif, single stranded interacting protein	within coordinates
Rr193213	regulatory region 193213	1683 bp proximal