rs48380767 SNP Detail

Summary

• ID
  rs48380767
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85869664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCATTG CTGTAAGTCA
  GAATTCCCTC CACTTGCCTG GAATCAGTAT TACGCCTTCA TCTCTTCATG CCATCCCTTT
  GCAATACAAA TAGCTCAGGG TGATTCAAAA TCTACTCAGA TACCTGGACA CATCCTATCA
  AATGTACAGA AGTTGCATCA TACACTTGAA TGGAAACCAT AGTGTAACTG TCTGACTAGT
  M
  TTCTTAGTTT CCCTCTGCAT GGCTCCCAGA CACATCATGT TTCATAAACT AAAACAATCG
  AAAAGACTTG GAAAAGACCT GTCATAGCTT GATGTTGGGT TTCAAGAAAA GTACATTAGC
  TATAGTTACG GAACACTTGT GTCCTACACT TATATGTGCC CCAAGTATAT AACATCTTAT
  TTCACTCACT CCCTACATCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451574	NES15428300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48380767					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451574	NES15428300	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85869664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	1577 bp proximal
Erg28	ergosterol biosynthesis 28	within coordinates
Tssr114435	transcription start site region 114435	1743 bp upstream
Tssr117107	transcription start site region 117107	1606 bp downstream
Tssr117108	transcription start site region 117108	1616 bp downstream
Tssr117109	transcription start site region 117109	1670 bp downstream
Tssr117110	transcription start site region 117110	1955 bp downstream
Ttll5	tubulin tyrosine ligase-like family, member 5	1753 bp upstream