rs48380866 SNP Detail

Summary

• ID
  rs48380866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99242426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTCCCG GGGAGAGGTC
  ATCCCTTTGT CTTTCGCGCT CACAGGCCCA CACCTCCTTA CCACCTGACT CAATGTGTTT
  GCACAGAGTG TGGAAGATGC ACACGTGAGG GAGAGTTGCA AAGACAGTGG CTGGCTGTGA
  GTGCAATGTT CAATGTCCAA CGTGAGACCC GTGACATCCT TTGGGACTTT ATTGCCCCAG
  Y
  GGGATTGTTC TCTCTGTTCC CAGACACACC AAGTTTGTTC AACATCAAAG CTTTCAGGTT
  CCTCTCTGCA GAATGGCCTC CTCCTTAGTC TTCCATAGAG TACAGTAGAG GTGAGGATGT
  TACTCGATGT TTTCCATTCT ACCAAACCCT GTTTATAACA ACAAACTGCT TTCCTAAGTT
  AACTGTAAGA GACTATTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61444643	NES16824611	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	T	T		C
ss323135632	CHEV_9_99260792	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48380866					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61444643	NES16824611	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99242426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1668 bp distal
Esyt3	extended synaptotagmin-like protein 3	1816 bp upstream
Rr198328	regulatory region 198328	375 bp proximal
Rr206935	regulatory region 206935	1625 bp distal
Tssr91051	transcription start site region 91051	1821 bp upstream