rs48381657 SNP Detail

Summary

• ID
  rs48381657
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116241972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATTTGGA CTGAATTTAT
  GCACTCTTAT GCCTGCCTCT TTTCCCTCAG ATTCCCACCA GAAGCCTGGA GCCCACACAA
  GCTCCTGAAC GCATCTACTA ATGAGCTGAA GGGAAAGGCC CACATTTGAG TTAAAGGTGT
  CACTTTGGTA GCGGCAGGAA TTGAACCCAG AGCTGTGTGC GTGCTAGGCA AGTGCCCCAC
  C
  ACTGAGCTAT CGCCCCAGCC CTTGCACAGG TTTCTTTATT TTGTTATTAA AATTTAATTT
  CGACATGGAA GAATGTGAAT GAATCCCCCA GCCCGCCGCC ACCGTAAATT GTGTAGTTAA
  ATTTCCCACA TTTGTGGAAA ATGCAGGGAT CAGCCAGTAG ATTTGGAATG CATTGGATGA
  TAAGTCTTAC TCTGGGAAAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135669761	ENSMUSSNP4516625	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48381657					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116241972 () rs orientation: forward

Symbol	Name	Function Class
Gm22361	predicted gene, 22361	68 bp downstream
Gm66091	predicted gene, 66091	within coordinates