rs48381793 SNP Detail

Summary

• ID
  rs48381793
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTAAACCA TATAATTACA CACTGAATGA TTGTGACATT
  GGAGGCCATG AATGAGCTAA GCATAAAATA GGTGATAGGT AAACAATATC TTTCTGTCAT
  K
  CCTGATGTCA ACTGTTCCTA AGGACTGGAA ACATACCAGA AGATTTTGAT TGGAGTCCTG
  GTGTCATTCC TCCTGCTTTT CTTCCTCCTG CTTTTTCTCA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52288638	NES15304565	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48381793					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288638	NES15304565	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370135 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93268	transcription start site region 93268	1973 bp downstream
Tssr93269	transcription start site region 93269	1944 bp downstream
Tssr93270	transcription start site region 93270	1298 bp downstream
Tssr93271	transcription start site region 93271	1180 bp downstream
Tssr93272	transcription start site region 93272	1125 bp downstream
Tssr93273	transcription start site region 93273	854 bp downstream
Tssr93274	transcription start site region 93274	321 bp downstream
Tssr93275	transcription start site region 93275	188 bp downstream
Tssr93276	transcription start site region 93276	134 bp downstream
Tssr93277	transcription start site region 93277	86 bp downstream
Tssr93278	transcription start site region 93278	50 bp downstream
Tssr93279	transcription start site region 93279	83 bp upstream
Tssr93280	transcription start site region 93280	542 bp upstream
Tssr93281	transcription start site region 93281	582 bp upstream
Tssr93282	transcription start site region 93282	606 bp upstream
Tssr93283	transcription start site region 93283	683 bp upstream
Tssr93284	transcription start site region 93284	1017 bp upstream
Tssr93285	transcription start site region 93285	1242 bp upstream
Tssr93286	transcription start site region 93286	1356 bp upstream
Tssr93287	transcription start site region 93287	1718 bp upstream
Tssr93288	transcription start site region 93288	1978 bp upstream
Tssr97556	transcription start site region 97556	430 bp downstream
Tssr97557	transcription start site region 97557	795 bp downstream
Tssr97558	transcription start site region 97558	1982 bp downstream