rs48382298 SNP Detail

Summary

• ID
  rs48382298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100140187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAAGCACA CCGGTGACCC ACGCCTAGCT ATGTATACAG
  GCACTGGGAA CTCTAACTTG GATTCTCATT ATGGCAAAGT AAGCTCTCTG GCCCACAAAG
  Y
  CATCACTCTA GCACCTCTCT GCATTTACAT TTATCCAAAG TCTAACAATT CATTTGCTAT
  TTGAATTACA TTTGCTACTT CTCCATTTTT TTTTAAATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145533066	ENSMUSSNP1358775	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48382298					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100140187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	1738 bp proximal
Gm72028	predicted gene, 72028	within coordinates
Rr652130	regulatory region 652130	1930 bp distal
Rr652131	regulatory region 652131	1312 bp proximal
Rr652132	regulatory region 652132	1439 bp proximal