rs48382945 SNP Detail

Summary

• ID
  rs48382945
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114159613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGATCTC AGGGGTGGGG
  AGGAAGGTTA GTTGAGACTG CTAGTCTTCC TATGGAATTT CCCTGCTCCT CAGCCTCTTC
  CAGATTTTCT CTCACTCAGG CCCAGGTATC CCCAGTTTCT GTGCATTGGT TGGGTGTAAG
  TATCTGCATC TGTCTCCTTC ACATGCTTTT TGGGCTTCCC AGGGGGTAGT CATGCTAGGG
  W
  CCTGTCTATG AGCACATAGT AGCATCAGTA ATAGTGTCAG GCCTTGGAGC TTCCCCTTGA
  GATGGATCTC AAGATGGGCC TAGCACTGGA ACTCCTTTCG TTCAGGCTTC TCTCAGGTTT
  TGTCCCTCAA ATTCTTTTCA AAAGGAACAG TTCTTGGTCA GAGTGGGCCG GAACGTGGAG
  CCTCTAGGAA GCATGCCATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss138771861	ENSMUSSNP5588608	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss324181031	CHEV_12_115434204	CHEVERUD	SCREENING_POP	f	SNP			A		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48382945					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114159613 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv3-3	immunoglobulin heavy variable V3-3	446 bp downstream
Tssr118065	transcription start site region 118065	931 bp downstream