rs48384042 SNP Detail

Summary

• ID
  rs48384042
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52650409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATTTCT CAAGCTCCCA
  CACAGACGTA GGAGAACAGC GAGCCTCCCA GCGTGCCGGA TAGCGGACTG CTTAGAGAAC
  TCACTCCCCT CCCCAGGCCT CTAGAGGAAG GCTCTTACCC AACATGCACC AGGAGCTAAT
  TTGCATAACC CCAAGGTAAA CCACACGGAC CCACGCCGCC AGCGTGATCC CCACTAAGCA
  G
  CAGGGGTTCA TGAGCATAGC TACACAGTTT CACTGAAAAA ACTTTTTCTT TGTTCCCGGG
  TTTACTGGGA GGCTAGGAGA AAAACGCGGG TCAAAGTCAC CCTAACTTAA AAAGTCAGGA
  ATTCTTCGTC CTTATATAGT CCACGGCTAG ACACTACGAT CGTGCTCGCT TCGGCAGCAC
  ATATACTAAA ATTGGAACGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137738339	ENSMUSSNP3517896	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs48384042					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52650409 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	1304 bp upstream
Cpgi4596	CpG island 4596	within coordinates
Cpgi4597	CpG island 4597	1015 bp proximal
Gm23296	predicted gene, 23296	859 bp downstream
Gm24859	predicted gene, 24859	162 bp upstream
Gm35239	predicted gene, 35239	1211 bp upstream
Gm59577	predicted gene, 59577	799 bp downstream
Rr369517	regulatory region 369517	1058 bp upstream
Rr403283	regulatory region 403283	27 bp upstream
Rr403284	regulatory region 403284	790 bp upstream
Rr466025	regulatory region 466025	1319 bp distal
Rr466026	regulatory region 466026	743 bp distal
Rr466027	regulatory region 466027	728 bp proximal
Rr466028	regulatory region 466028	1257 bp proximal
Tssr116285	transcription start site region 116285	1278 bp upstream
Tssr116286	transcription start site region 116286	1255 bp upstream